We are pleased to announce that we will be giving another practical course on bioinformatics for Integrative Genomics this year. It will take place from November 7-9, 2011, in Oeiras, Portugal, as part of the Gulbenkian Training Programme in Bioinformatics. The course teachers will be Alba Jené and myself from our group. Read the rest of this entry »
Basic and intuitive analysis of microarray datasets using Gitools (Part 2)
In this series of posts I am showing how expression data can be analyzed using Gitools. In a previous post I explained how to do pathway enrichment analysis. Here I explain how to identify genes significantly up-regulated in a cancer dataset using Oncodrive. Read the rest of this entry »
Basic and intuitive analysis of microarray datasets using Gitools (Part 1)
After preparing some tutorials for our software, I thought it would be useful to show how basic analyses on microarray data can be carried out using Gitools.
For that, first I needed to find a nice dataset that would serve as an example in Gitools. Read the rest of this entry »