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Computational Oncogenomics
The biomedical genomics blog

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Sophia Derdak

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Sophia
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sderdak

Latest posts by sderdak

  • Bioinformatics for Integrative Genomics course | October 11, 2011

  • About

    This is a blog written by the members of the Biomedical Genomics group at the University Pompeu Fabra in Barcelona. With this blog we want to have a flexible means to communicate with the research community and the users of tools and resources developed in our lab (e.g. IntOGen, Gitools).

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    Barcelona cancer Cancer genomics cancer mutations chip-on-chip chipseq collaboration condel course deleterious mutations differentiation enrichment analysis epigenetics Gene Ontology gene regulation gitools interactive heatmap IntOGen lung tumors microarray data analysis multi-dimensional data Oncodrive onexus open source p27 pathways polycomb Polyphen2 PRBB protocol publication Python research centres Science SIFT slea SNVs SVG SVGMap TCGA twitter Urban visualization tool welcome ZRF1

  • Recent Posts

    • Sample Level Enrichment Analysis (SLEA) Tutorial and Gitools 1.6.2
    • Sample Level Enrichment Analysis (SLEA) unravels shared stress phenotypes among multiple cancer types
    • BIG12 – Bioinformatics for Integrative Genomics course in Oeiras
    • Gitools 1.6.1 release
    • Exploring the effect of cancer genomic alteration on expression with Gitools
    • Visualizing mutually exclusive alteration patterns in cancer with Gitools
    • Exploring multiple cancer genomics alterations with Gitools.
    • Gitools 1.6.0 release
    • Sample Level Enrichment Analysis (SLEA) in Gitools to assess the transcriptional status of pathways per tumor
    • Gitools database importer update: KEGG and Ensembl

  • Authors

    • abel
    • Alba Jene
    • christian
    • ggundem
    • Jordi Deu-Pons
    • khademul
    • Michi
    • Nuria Lopez-Bigas
    • sderdak
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